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  • Datasets 74
  • Publications 35
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Chi-Shuo Chen

Assistant Professor
National Tsing Hua University / Department of Biomedical Engineering and Environmental Sciences
chen.cs@mx.nthu.edu.tw

Aggregation and Degradation of Dispersants and Oil by Microbial Exopolymers (ADDOMEx)

RFP-IV
Gulf of Mexico Research Initiative (GoMRI)
Dataset Available

Microbial EPS production in response to oil spills; Prediction of marine aggregate’s exposure to chemically enhanced (COREXIT) water accommodated fraction of oil using Fourier Transform Infrared (FTIR) spectroscopy

Authors: Manoj Kamalanathan
Published On: Nov 29 2017 20:22 UTC
File Format: csv
DOI: 10.7266/N7KP8069
UDI: R4.x263.000:0001
File Size: 668.46 KB
Dataset Available

Dataset for: The impact of dissolved inorganic nitrogen and phosphorous on responses of microbial plankton to the Texas City “Y” oil spill in Galveston Bay, Texas

Authors: Alicia WIlliams, Antonietta Quigg
Published On: Jun 05 2017 18:46 UTC
File Format: csv
DOI: 10.7266/N76H4FGM
UDI: R4.x263.000:0002
File Size: 235.88 KB
Dataset Available

The carbon budget for microbial EPS production in response to oil and Corexit for COAST, a mesocosm of coastal water with COASTal microbial concentrate

Authors: Chen Xu, Saijin Zhang, Morgan Beaver, Peng Lin, Luni Sun, Kathy Schwehr, Oscar Agueda, Peter Santschi, Terry Wade, Tony Knapp, Antonietta Quig, Wassim Obieda, Andrew Wozniak, Pat Hatcher
Published On: May 04 2017 20:40 UTC
File Format: csv
DOI: 10.7266/N7SF2T7V
UDI: R4.x263.000:0003
File Size: 6.19 KB
Dataset Available

Coastal water with coastal microbial concentrate (COAST): Microbial cell and micro-aggregate counts with parallel beta-galactosidase activity measurements

Authors: Shawn Doyle, Emily Whitaker, Jason Sylvan
Published On: May 04 2017 20:42 UTC
File Format: csv
DOI: 10.7266/N7R78C8T
UDI: R4.x263.000:0004
File Size: 29.46 KB
Dataset Available

EPS mechanisms in aggregation and dispersion of oil: roller tank experiment using Chaetoceros and natural bacterial inoculum

Authors: Uta Passow
Published On: Mar 27 2018 15:12 UTC
File Format: csv
DOI: 10.7266/N70K26Z2
UDI: R4.x263.000:0005
File Size: 1.15 KB
Dataset Available

EPS mechanisms in aggregation and dispersion of oil: roller tank experiment using Thalassiosira pseudonana culture and natural bacterial inoculum

Authors: Uta Passow
Published On: Mar 28 2018 19:54 UTC
File Format: csv
DOI: 10.7266/N78W3BP3
UDI: R4.x263.000:0006
File Size: 2.15 KB
Dataset Available

Test of Coastal water with coastal microbial concentrate (TeCOAST): Production of TEP as a function of oil

Authors: Uta Passow
Published On: Jul 17 2017 13:40 UTC
File Format: csv
DOI: 10.7266/N7VT1QDW
UDI: R4.x263.000:0007
File Size: 259 B
Dataset Available

Coastal water with coastal microbial concentrate (COAST): Production of TEP and CSP as a function of oil

Authors: Uta Passow
Published On: Jul 17 2017 13:53 UTC
File Format: csv
DOI: 10.7266/N7PZ5759
UDI: R4.x263.000:0008
File Size: 836 B
Dataset Available

GOM open ocean (GOMOO): Production of TEP (transparent exopolymers) and CSP (Coomassie stained particles) as a function of oil

Authors: Uta Passow
Published On: Jul 17 2017 15:40 UTC
File Format: csv
DOI: 10.7266/N7ST7N61
UDI: R4.x263.000:0009
File Size: 656 B
Dataset Available

GOM coastal waters (GOMCOAST): Production of TEP (transparent exopolymers) and CSP (Coomassie stained particles) as a function of oil

Authors: Uta Passow
Published On: Aug 30 2017 21:12 UTC
File Format: csv
DOI: 10.7266/N7RV0M1R
UDI: R4.x263.000:0010
File Size: 1.15 KB
Dataset Available

Impact of Corexit on aggregation of young Chaetoceros: Rolling table experiment to test the aggregation of diatoms, TEP (transparent exopolymers), POC (particulate organic carbon) as a function of oil and oil+Corexit

Authors: Uta Passow
Published On: Aug 02 2017 19:16 UTC
File Format: csv
DOI: 10.7266/N78K7743
UDI: R4.x263.000:0011
File Size: 14.72 KB
Dataset Available

Impact of Corexit on aggregation of old Chaetoceros: Rolling table experiment to test the aggregation of diatoms, TEP(transparent exopolymers), POC(particulate organic carbon) as a function of oil and oil+Corexit

Authors: Uta Passow
Published On: Aug 02 2017 19:16 UTC
File Format: csv
DOI: 10.7266/N74T6GDC
UDI: R4.x263.000:0012
File Size: 2.08 KB
Dataset Available

Impact of Corexit on aggregation of Skeletonema grethae in oil contaminated natural seawater, high oil concentrations: Rolling table experiment to test the aggregation of diatoms, TEP(transparent exopolymers), POC (particulate organic carbon) as a function of the presence of Corexit and investigate the change in marine snow over time

Authors: Uta Passow
Published On: Aug 02 2017 19:16 UTC
File Format: csv
DOI: 10.7266/N7125QQD
UDI: R4.x263.000:0013
File Size: 2.02 KB
Dataset Available

Impact of Corexit on aggregation of Skeletonema grethae or natural particles in oil contaminated natural seawater, low oil concetrations: Rolling table experiment to test the aggregation of diatoms, TEP (transparent exopolymers), POC (particulate organic carbon) as a function of the presence of Corexit and investigate the change in marine snow over time

Authors: Uta Passow
Published On: Aug 02 2017 19:16 UTC
File Format: csv
DOI: 10.7266/N7WD3XNF
UDI: R4.x263.000:0014
File Size: 2.11 KB
Dataset Available

Phytoplankton community response to crude oil and dispersants in four different mesocosm treatments after 72h

Authors: Laura Bretherton, Manoj Kamalanathan, Jennifer Genzer, Jessica Hillhouse, Antonietta Quigg
Published On: May 04 2017 20:43 UTC
File Format: csv
DOI: 10.7266/N7028PMG
UDI: R4.x263.000:0015
File Size: 643 B
Dataset Available

EPS mechanisms which aid in aggregation: A test of light to induce bacterial EPS aggregation, particle size of the EPS solution; protein and carbohydrate composition of aggregates and colloidal filtrate

Authors: Luni Sun,Luni Sun, Chen Xu, Saijin Zhang, Peng Lin, Kathleen A. Schwehr, Antonietta Quigg, Meng-Hsuen Chiu, Wei-Chun Chin, Peter H. Santschi
Published On: Apr 28 2017 18:30 UTC
File Format: csv
DOI: 10.7266/N7BC3WKT
UDI: R4.x263.000:0016
File Size: 1.82 MB
Dataset Available

Photographs of marine phytoplankton exposed to crude oil and dispersants in mesocosm tanks after 72h

Authors: Laura Bretherton, Breanna Couffer, Antonietta Quigg
Published On: May 04 2017 20:44 UTC
File Format: jpg
DOI: 10.7266/N7DJ5CP2
UDI: R4.x263.000:0017
File Size: 21.37 MB
Dataset Available

Oil Composition for the TeCOAST mesocosm study, Test of COASTal water with coastal microbial concentrate

Authors: Terry L. Wade, Anthony H. Knap, Dawei Shi, Gerardo Gold-Bouchot, Maya E. Morales-McDevitt, Stephen T. Sweet, Peter H. Santschi and Antonietta Quigg
Published On: Apr 28 2017 19:51 UTC
File Format: csv
DOI: 10.7266/N7TB14ZW
UDI: R4.x263.000:0018
File Size: 3.24 KB
Dataset Available

Oil Composition and nutrients for the COAST mesocosm study, COASTal water with added coastal microbial concentrate

Authors: Terry L. Wade, Anthony H. Knap, Dawei Shi, Gerardo Gold-Bouchot, Maya E. Morales-McDevitt, Stephen T. Sweet, Peter H. Santschi and Antonietta Quigg
Published On: Apr 28 2017 19:54 UTC
File Format: csv
DOI: 10.7266/N7PK0D64
UDI: R4.x263.000:0019
File Size: 12.02 KB
Dataset Available

Response of oil-degrading microbes to dispersants and how dispersants affect the ternary system (oil-dispersant-EPS): from TeCOAST, Test of Coastal water with coastal microbial concentrate, DOM FTICR MS data

Authors: Pat Hatcher, Andrew Wozniak
Published On: May 04 2017 20:45 UTC
File Format: csv
DOI: 10.7266/N7CZ356C
UDI: R4.x263.000:0020
File Size: 5.44 MB
Dataset Available

Response of oil-degrading microbes to dispersants in a ternary system (oil-dispersant-EPS): TeCOAST, a mesocosm Test of COASTal water with microbial concentrate, Solid-state 13C NMR data for EPS

Authors: Pat Hatcher and Andrew Wozniak
Published On: Mar 01 2017 22:55 UTC
File Format: csv
DOI: 10.7266/N7862DHD
UDI: R4.x263.000:0021
File Size: 115.45 MB
Dataset Available

Response of oil-degrading microbes in a ternary system (oil-dispersant-EPS): COAST, coastal water mesocosm with microbial concentrate, solid-state 13C NMR data

Authors: Pat Hatcher and Andrew Wozniak
Published On: Mar 07 2017 16:44 UTC
File Format: csv
DOI: 10.7266/N70R9MFP
UDI: R4.x263.000:0022
File Size: 100.49 MB
Dataset Available

p450 gene abundance measurements in the COAST mesocosm study

Authors: Shawn Doyle, Emily Whitaker, Veronica De Pascuale, Jason Sylvan
Published On: Apr 21 2017 14:05 UTC
File Format: csv
DOI: 10.7266/N7SB43TH
UDI: R4.x263.000:0023
File Size: 11.71 KB
Dataset Available

Three dimensional micrographs of microbe-oil microaggregates from the TeCOAST and COAST mesocosms

Authors: Shawn Doyle, Jason Sylvan
Published On: May 04 2017 18:57 UTC
File Format: tif, avi, czi
DOI: 10.7266/N7HT2MDX
UDI: R4.x263.000:0024
File Size: 2.68 GB
Dataset Available

Particle counts in different size fractions taken during mesocosms GOMOO, GOM open ocean, and GOMCOAST, GOM coastal waters

Authors: Laura Bretherton
Published On: Mar 23 2018 16:39 UTC
File Format: csv
DOI: 10.7266/N7CF9NK6
UDI: R4.x263.000:0025
File Size: 10.53 KB
Dataset Available

Response of oil-degrading microbes in the ternary (oil-dispersant-EPS) system: TeCOAST, Test of Coastal water with coastal microbial concentrate, bottom particle dichloromethane extract FTICR MS data

Authors: Andrew Wozniak, Pat Hatcher
Published On: May 23 2017 16:37 UTC
File Format: csv
DOI: 10.7266/N7BR8Q8D
UDI: R4.x263.000:0026
File Size: 526.86 KB
Dataset Available

Response of oil-degrading microbes in the ternary (oil-dispersant-EPS) system: COAST, mesocosm experiment with Coastal water with coastal microbial concentrate, bottom particle dichloromethane extract FTICR MS data

Authors: Andrew Wozniak, Pat Hatcher
Published On: May 23 2017 16:48 UTC
File Format: csv
DOI: 10.7266/N7GH9G1K
UDI: R4.x263.000:0027
File Size: 494.52 KB
Dataset Available

The microbial EPS production and composition in response to oil and Corexit for COAST, a mesocosm of COASTal water with COASTal microbial concentrate

Authors: Chen Xu, Saijin Zhang, Morgan Beaver, Peng Lin, Luni Sun, Kathy Schwehr, Laura Bretherton, Peter Santschi, Antonietta Quig
Published On: May 23 2017 18:38 UTC
File Format: xlsx, csv
DOI: 10.7266/N7WM1BHX
UDI: R4.x263.000:0028
File Size: 52.81 KB
Dataset Available

The effect of Oil and Corexit on Marine Phytoplankton Exopolymeric Substances Release

Authors: Wei-Chun Chin and James (Meng-Hsuen) Chiu
Published On: Jul 17 2017 19:48 UTC
File Format: csv
DOI: 10.7266/N7RF5S4X
UDI: R4.x263.000:0029
File Size: 17.56 KB
Dataset Available

Impact of Oil Spill on Marine Microgel Aggregation Process

Authors: Wei-Chun Chin, James Meng-Hsuen Chiu
Published On: Jul 11 2017 16:55 UTC
File Format: csv
DOI: 10.7266/N7ZW1J1H
UDI: R4.x263.000:0030
File Size: 7.49 KB
Dataset Available

GC MS data for bottom particle dichloromethane extracts from the COAST, a COASTAL water mesocosm experiment amended with microbial concentrate

Authors: Pat Hatcher and Andrew Wozniak
Published On: Jun 28 2017 16:20 UTC
File Format: jpg, csv
DOI: 10.7266/N7765CJ8
UDI: R4.x263.000:0031
File Size: 19.92 MB
Dataset Available

Long Term Marine Oil Snow Experiment (LTMOSE): TEP as a function of time

Authors: Uta Passow
Published On: Jul 17 2017 16:21 UTC
File Format: csv
DOI: 10.7266/N75D8Q8D
UDI: R4.x263.000:0032
File Size: 833 B
Dataset Available

The effects of sunlight on the composition of exopolymeric substances affecting the subsequent aggregation process during oil spill and Corexit exposure

Authors: Luni Sun, Chen Xu, Peng Lin, Kathleen A. Schwehr, Antonietta Quigg, Meng-Hsuen Chiu, Wei-Chun Chin, Peter H. Santschi
Published On: Sep 20 2017 20:04 UTC
File Format: csv
DOI: 10.7266/N7C53J9B
UDI: R4.x263.000:0033
File Size: 11.47 KB
Dataset Available

Roller Tank Experiment for the component-specific Investigation of Oil Incorporation into Marine Oil Snow with a Phytoplankton Mixture (t = 4 days)

Authors: Uta Passow, Marisa Wirth, D. Schulz-Bull
Published On: Nov 13 2017 16:18 UTC
File Format: csv
DOI: 10.7266/N7ZP44KS
UDI: R4.x263.000:0034
File Size: 6.52 KB
Dataset Available

Roller Tank Experiment for the component-specific Investigation of Oil Incorporation into Marine Oil Snow with a Phytoplankton Culture (Nodularia) (t = 24 hours)

Authors: Uta Passow, Marisa Wirth, D. Schulz-Bull
Published On: Nov 13 2017 17:17 UTC
File Format: csv
DOI: 10.7266/N7TX3CTM
UDI: R4.x263.000:0035
File Size: 12.87 KB
Dataset Available

Component-specific Investigation of Oil Distribution in Seawater - Partitioning of oil in the absence of biota : Control tank data after 1 hour

Authors: Uta Passow, Marisa Wirth, D. Schulz-Bull
Published On: Nov 13 2017 22:48 UTC
File Format: csv
DOI: 10.7266/N7Q52N25
UDI: R4.x263.000:0036
File Size: 2.95 KB
Dataset Available

Extracellular Enzyme Activity Profile in Chemically Enhanced Water Accommodated Fraction of Surrogate Oil from BP Oil Spill

Authors: Manoj Kamalanathan, Chen Xu
Published On: Dec 12 2017 15:11 UTC
File Format: csv
DOI: 10.7266/N7348HTQ
UDI: R4.x263.000:0037
File Size: 6 KB
Dataset Available

Oil Composition and nutrients for the GOMOO mesocosm using Gulf Of Mexico Open Ocean water

Authors: Terry L. Wade, Anthony H. Knap, Dawei Shi, Gerardo Gold-Bouchot, Maya E. Morales-McDevitt, Stephen T. Sweet, Peter H. Santschi and Antonietta Quigg
Published On: Dec 07 2017 17:05 UTC
File Format: csv
DOI: 10.7266/N78P5XZD
UDI: R4.x263.000:0038
File Size: 51.22 KB
Dataset Available

Oil Composition and nutrients for the GOMCOAST mesocosm using Gulf Of Mexico COASTal water

Authors: Terry L. Wade, Anthony H. Knap, Dawei Shi, Gerardo Gold-Bouchot, Maya E. Morales-McDevitt, Stephen T. Sweet, Peter H. Santschi and Antonietta Quigg
Published On: Aug 21 2019 19:40 UTC
File Format: csv
DOI: 10.7266/N74X568X
UDI: R4.x263.000:0039
File Size: 41.97 KB
Dataset Available

Chemical Composition of WAF made through a novel passive dosing method tested during the GOMCOAST mesocosm using Gulf Of Mexico COASTal water

Authors: Gopal Bera, Terry Wade, Anthony Knap
Published On: Nov 20 2017 21:14 UTC
File Format: csv
DOI: 10.7266/N7BG2MGT
UDI: R4.x263.000:0040
File Size: 15.3 KB
Dataset Available

Photographs of aggregates in the mesocosm COASTal water amended with COASTal microbial concentrate

Authors: Peter Santschi, Chen Xu
Published On: Nov 30 2017 14:51 UTC
File Format: tif
DOI: 10.7266/N7C53JBS
UDI: R4.x263.000:0041
File Size: 1.33 MB
Dataset Available

Percent relative abundance of the eukaryotic microbial community in the GOMCOAST (Gulf of Mexico, Coastal Water) mesocosm from 8 micron polycarbonate filters

Authors: Zoe V. Finkel, Andrew J. Irwin, Yue Liang, Chris M. Brown, Michaël Bradet-Legris, Laura Bretherton, Antonietta Quigg
Published On: Aug 27 2018 21:03 UTC
File Format: csv, txt
DOI: 10.7266/N7JD4V8Z
UDI: R4.x263.000:0042
File Size: 4.05 MB
Dataset Available

Production of extracellular polymeric substances (EPS) and hydrocarbon degradation of bacteria isolated from the northern Gulf of Mexico surface water

Authors: Manoj Kamalanathan, Kathy Schwehr, Antonietta Quigg
Published On: Mar 29 2018 16:01 UTC
File Format: xlsx
DOI: 10.7266/N76H4FXF
UDI: R4.x263.000:0043
File Size: 92.55 KB
Dataset Available

Light induced aggregation of protein-containing compounds

Authors: Luni Sun, Meng-Hsuen Chiu, Wei-Chun Chin, Peter H. Santschi
Published On: Mar 21 2018 20:38 UTC
File Format: csv
DOI: 10.7266/N7DJ5D49
UDI: R4.x263.000:0044
File Size: 5.01 KB
Dataset Available

Particle size of light induced aggregates using flow cytometry

Authors: Luni Sun, Meng-Hsuen Chiu, Wei-Chun Chin, Peter H. Santschi
Published On: Jun 06 2018 20:23 UTC
File Format: csv
DOI: 10.7266/N7TM78M3
UDI: R4.x263.000:0045
File Size: 3.9 MB
Dataset Available

GOM open ocean (GOMOO): Illumina MiSeq sequenced 16S library of Microbial Community Response to Oil and Corexit

Authors: Doyle, Shawn; Sylvan, Jason
Published On: Apr 23 2018 18:31 UTC
File Format: txt
DOI: 10.7266/N7C53JDP
UDI: R4.x263.000:0046
File Size: 61.75 KB
Dataset Available

GOM coastal waters (GOMCOAST): Illumina MiSeq sequenced 16S library of Microbial Community Response to Oil and Corexit

Authors: Doyle, Shawn; Sylvan, Jason
Published On: May 07 2018 21:12 UTC
File Format: txt
DOI: 10.7266/N77D2SPZ
UDI: R4.x263.000:0047
File Size: 55.76 KB
Dataset Available

Surface tension of exopolymeric substances in seawater in the presence or absence of oil and/or Corexit

Authors: Kathy Schwehr, Chen Xu, Saijin Zhang, Morgan Beaver, Cameron Jackson, Oscar Agueda, Charles Bergen
Published On: Apr 24 2018 14:17 UTC
File Format: csv
DOI: 10.7266/N79W0D1K
UDI: R4.x263.000:0048
File Size: 10.44 KB
Dataset Available

Intercalibration of the Estimated Oil Equivalence (EOE) of WAFs and CEWAFs using 3 different spectrofluorometers

Authors: Gopal Bera, Gerardo Gold-Bouchot, Terry L. Wade, Dawei Shi, Maya Morales-McDevitt, Noemi Ramirez-Miss, Anthony H. Knap, Antonietta Quigg
Published On: Oct 10 2018 14:51 UTC
File Format: csv
DOI: 10.7266/N71G0JX8
UDI: R4.x263.000:0049
File Size: 4.76 KB
Dataset Available

Bulk chemistry of aggregates and EPS for roller table experiments for diatom aggregation in the presence or absence of oil

Authors: Chen Xu, Peter H. Santschi
Published On: Sep 21 2018 14:05 UTC
File Format: csv
DOI: 10.7266/N780517B
UDI: R4.x263.000:0050
File Size: 9.04 KB
Dataset Available

Molecular level characterization of oil and aggregate oxidation products: Mesocosm LTMOSE, a Long Term Marine Oil Snow Experiment, Fourier transform ion cyclotron mass spectrometry (FTICR-MS) data

Authors: Waggoner, Derek; Hatcher, Patrick
Published On: Feb 25 2019 20:40 UTC
File Format: txt, xlsx
DOI: 10.7266/n7-bve1-9669
UDI: R4.x263.000:0051
File Size: 3.03 MB
Dataset Available

Molecular level characterization of oil and aggregate oxidation products: Mesocosm LTMOSE, a Long Term Marine Oil Snow Experiment, Nuclear magnetic resonance (NMR) data

Authors: Waggoner, Derek; Hatcher, Patrick
Published On: Apr 04 2019 15:02 UTC
File Format: xlsx
DOI: 10.7266/n7-h48m-xk08
UDI: R4.x263.000:0052
File Size: 92.18 MB
Dataset Available

Oil concentration, oil composition, biomarkers, and nutrients for the mesocosm LTMOSE, a Long Term Marine Oil Snow Experiment

Authors: Gopal Bera, Maya Erin Morales-McDevitt, Terry Wade, Tony Knap
Published On: Feb 27 2019 16:47 UTC
File Format: csv
DOI: 10.7266/n7-hs2n-xf29
UDI: R4.x263.000:0053
File Size: 57.67 KB
Dataset Available

Marine gels, extracellular polymeric substances (EPS) and transparent exopolymeric particles (TEP) in natural seawater and seawater contaminated with a water accommodated fraction of Macondo oil surrogate

Authors: Chen Xu, Peter Santschi, Uta Passow, Antonietta Quigg, Luni Sun, Peng Lin, Wei Xing
Published On: Mar 04 2019 21:06 UTC
File Format: csv
DOI: 10.7266/n7-26a0-bg20
UDI: R4.x263.000:0054
File Size: 4.84 KB
Dataset Available

Petrocarbon incorporation into marine snow in three mesocosm experiments and the exopolymeric substances (EPS) composition

Authors: Chen Xu, Peter Santschi, Antonietta Quigg, Luni Sun, Peng, Lin, Wei Xing
Published On: Apr 25 2019 18:29 UTC
File Format: csv
DOI: 10.7266/n7-379m-mj15
UDI: R4.x263.000:0055
File Size: 5.02 KB
Dataset Available

Microbial community dynamics in the Flower Garden Banks National Marine Sanctuary (FGBNMS) after the summer 2016 mass invertebrate mortality event, 2016-07-31 to 2016-08-01

Authors: Shawn Doyle, Emily Whitaker, Jason Sylvan
Published On: Feb 20 2019 20:12 UTC
File Format: txt
DOI: 10.7266/n7-3qsb-3n83
UDI: R4.x263.000:0056
File Size: 35.56 KB
Dataset Available

Microbial community response in non-axenic cultures of Thalassiosira pseudonana to crude oil with and without the chrysolaminarin synthesis inhibitor dichlorobenzonitrile

Authors: Shawn Doyle, Manoj Kamalanathan, Hernando Bacosa
Published On: Feb 20 2019 21:26 UTC
File Format: txt
DOI: 10.7266/n7-7vhe-m749
UDI: R4.x263.000:0057
File Size: 8.68 KB
Dataset Available

Biological and physiological responses during 14 day incubations of 15 phytoplankton species in culture exposed to oil and combinations of oil and dispersant

Authors: Quigg, Antonietta; Williams, Alicia
Published On: Sep 06 2016 20:10 UTC
File Format: csv
DOI: 10.7266/N79P2ZPD
UDI: R4.x263.187:0001
File Size: 221.66 KB
Dataset Available

Microbial species growth and exopolymeric substance production microchip screening test

Authors: James Chiu, Wei-Chun Chin
Published On: Jun 22 2017 15:41 UTC
File Format: mov, txt, tif
DOI: 10.7266/N78C9TCZ
UDI: R4.x263.188:0001
File Size: 48.29 MB
Dataset Available

EPS mechanisms in aggregation and dispersion of oil: roller tank experiment using Skeletonema, POC-PON-EOE-TEP-CSP

Authors: Uta Passow
Published On: Mar 23 2018 19:39 UTC
File Format: csv
DOI: 10.7266/N7ZW1JBJ
UDI: R4.x263.188:0002
File Size: 858 B
Dataset Available

EPS mechanisms in aggregation and dispersion of oil: roller tank experiment using Skeletonema CCMP strain #776

Authors: Uta Passow
Published On: Mar 27 2018 14:33 UTC
File Format: csv
DOI: 10.7266/N73N21SC
UDI: R4.x263.188:0003
File Size: 3.62 KB
Dataset Available

EPS mechanisms in aggregation and dispersion of oil: roller tank experiment using the diatom Odontella

Authors: Uta Passow
Published On: Apr 11 2018 21:43 UTC
File Format: csv
DOI: 10.7266/N77D2SHQ
UDI: R4.x263.188:0004
File Size: 3.94 KB
Dataset Available

EPS mechanisms which aid in aggregation: A test of light to induce bacterial EPS aggregation, turbidity, aggregate weight, FTIR, DOC and DN, and UV-Vis

Authors: Luni Sun; Peter Santschi
Published On: Apr 25 2017 15:49 UTC
File Format: csv
DOI: 10.7266/N78S4MXW
UDI: R4.x263.188:0005
File Size: 37.87 KB
Dataset Available

EPS mechanisms which aid in aggregation: Light-induced aggregation of bacterial exopolymeric substances using DLS

Authors: Chiu, Meng-Hsuen (James), Chin, Wei-Chun
Published On: Apr 25 2017 15:52 UTC
File Format: csv
DOI: 10.7266/N7J67F1X
UDI: R4.x263.188:0006
File Size: 17.58 KB
Dataset Available

Impact of Oil and Corexit on Marine Dissolved Organic Matter (DOM) Aggregation and Microgel Formation Through Dynamic Laser Scattering (DLS)

Authors: Chin, Wei-Chun; Chiu, Meng-Hsuen (James)
Published On: Jul 03 2017 18:51 UTC
File Format: csv
DOI: 10.7266/N7KH0KBC
UDI: R4.x263.189:0002
File Size: 9.85 KB
Dataset Available Remotely Hosted

Illumina MiSeq sequenced 16S library of Microbial Community Response to Oil and Corexit in Coastal Water Mesocosms

Authors: Shawn Doyle, Jason Sylvan
Published On: May 04 2017 20:30 UTC
File Format: fastq
DOI: 10.7266/N72F7KGG
UDI: R4.x263.189:0003
Dataset Available

Scanning Electron Microscopy (SEM) observation of morphologies of sediments from a mesocosm experiment studying formation of marine aggregates with oil and dispersant

Authors: Chin, Wei-Chun; Chiu, Meng-Hsuen (James)
Published On: May 04 2017 20:33 UTC
File Format: tif, text
DOI: 10.7266/N79Z92X6
UDI: R4.x263.189:0004
File Size: 6.82 MB
Dataset Available

Fluorescence Enhancement Measurement of hydrophobic components and polysaccharides in sediment exposed to oil and dispersant

Authors: Chin, Wei-Chun; Chiu, Meng-Hsuen (James)
Published On: May 04 2017 20:34 UTC
File Format: csv, tif, ASCII txt
DOI: 10.7266/N7610XB8
UDI: R4.x263.189:0005
File Size: 93.86 MB
Dataset Available

False-colored photographs of micro-scale microbial aggregates collected from four different mesocosm treatments after 48 hours

Authors: Doyle, Shawn; Sylvan, Jason
Published On: Sep 07 2016 13:12 UTC
File Format: tif, txt
DOI: 10.7266/N7FF3QCP
UDI: R4.x263.189:0006
File Size: 18.25 MB
Dataset Available

Raw and processed negative electrospray ionization coupled to Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) data for mesocosm experiment samples collected from bulk DOM tank, control tank marine snow, and WAF tank marine snow.

Authors: Obeid, Wassim; Hatcher, Pat
Published On: Oct 21 2016 19:47 UTC
File Format: xls, txt
DOI: 10.7266/N72805NC
UDI: R4.x263.189:0007
File Size: 967.11 KB
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Photographs of microbial aggregates with and without oil or Corexit collected from four different mesocosm treatments

Authors: Quigg, Antonietta
Published On: Oct 21 2016 19:22 UTC
File Format: jpg
DOI: 10.7266/N7XG9P60
UDI: R4.x263.189:0008
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Fast repetition rate fluorescence responses of natural phytoplankton communities incubated for 3 days in a mesocosm experiment exposed to crude oil and chemical dispersants, July 2016

Authors: Laura Bretherton, Manoj Kamalanathan, Jennifer Genzer, Jessica Hillhouse, Antonietta Quigg
Published On: May 04 2017 20:36 UTC
File Format: csv
DOI: 10.7266/N7NP22G2
UDI: R4.x263.189:0009
File Size: 8.36 KB
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Eukaryotic community response to oil and Corexit in a coastal water mesocosm, August 2015

Authors: Zoe Finkel, Andrew Irwin
Published On: Feb 22 2019 21:18 UTC
File Format: txt
DOI: 10.7266/n7-kvpb-0878
UDI: R4.x263.189:0010
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Eukaryotic community response to oil and Corexit in a mesocosm, October 2015

Authors: Zoe Finkel, Andrew Irwin
Published On: Feb 25 2019 20:38 UTC
File Format: txt
DOI: 10.7266/n7-43q9-xq06
UDI: R4.x263.189:0011
File Size: 6.63 KB

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Kamalanathan, M., Chiu, M.-H., Bacosa, H., Schwehr, K., Tsai, S.-M., Doyle, S., … Quigg, A. (2019). Role of Polysaccharides in Diatom Thalassiosira pseudonana and its Associated Bacteria in Hydrocarbon Presence. Plant Physiology, 180(4), 1898–1911. doi:10.1104/pp.19.00301

Kamalanathan, M., Mapes, S., Prouse, A., Faulkner, P., Klobusnik, N. H., Hillhouse, J., Hala, D., & Quigg, A. (2022). Core metabolism plasticity in phytoplankton: Response of Dunaliella tertiolecta to oil exposure. Journal of Phycology, 58(6), 804–814. Portico. https://doi.org/10.1111/jpy.13286

Kamalanathan, M., Schwehr, K. A., Bretherton, L., Genzer, J., Hillhouse, J., Xu, C., … Quigg, A. (2018). Diagnostic tool to ascertain marine phytoplankton exposure to chemically enhanced water accommodated fraction of oil using Fourier Transform Infrared spectroscopy. Marine Pollution Bulletin, 130, 170–178. doi:10.1016/j.marpolbul.2018.03.027

Kamalanathan, M., Xu, C., Schwehr, K., Bretherton, L., Beaver, M., Doyle, S. M., … Quigg, A. (2018). Extracellular Enzyme Activity Profile in a Chemically Enhanced Water Accommodated Fraction of Surrogate Oil: Toward Understanding Microbial Activities After the Deepwater Horizon Oil Spill. Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.00798

Kealoha, A. K., Doyle, S. M., Shamberger, K. E. F., Sylvan, J. B., Hetland, R. D., & DiMarco, S. F. (2019). Localized hypoxia may have caused coral reef mortality at the Flower Garden Banks. Coral Reefs, 39(1), 119–132. doi:10.1007/s00338-019-01883-9

Morales-McDevitt, M. E., Shi, D., Knap, A. H., Quigg, A., Sweet, S. T., Sericano, J. L., & Wade, T. L. (2020). Mesocosm experiments to better understand hydrocarbon half-lives for oil and oil dispersant mixtures. PLOS ONE, 15(1), e0228554. doi:10.1371/journal.pone.0228554

Passow, U., Sweet, J., & Quigg, A. (2017). How the dispersant Corexit impacts the formation of sinking marine oil snow. Marine Pollution Bulletin. doi:10.1016/j.marpolbul.2017.08.015

Passow, U., Sweet, J., Francis, S., Xu, C., Dissanayake, A., Lin, Y., … Quigg, A. (2019). Incorporation of oil into diatom aggregates. Marine Ecology Progress Series, 612, 65–86. doi:10.3354/meps12881

Quigg, A., Parsons, M., Bargu, S., Ozhan, K., Daly, K. L., Chakraborty, S., … Buskey, E. J. (2021). Marine phytoplankton responses to oil and dispersant exposures: Knowledge gained since the Deepwater Horizon oil spill. Marine Pollution Bulletin, 164, 112074. doi:10.1016/j.marpolbul.2021.112074

Quigg, A., Passow, U., Chin, W.-C., Xu, C., Doyle, S., Bretherton, L., … Santschi, P. H. (2016). The role of microbial exopolymers in determining the fate of oil and chemical dispersants in the ocean. Limnology and Oceanography Letters. doi:10.1002/lol2.10030

Schwehr, K. A., Xu, C., Chiu, M.-H., Zhang, S., Sun, L., Lin, P., … Santschi, P. H. (2018). Protein: Polysaccharide ratio in exopolymeric substances controlling the surface tension of seawater in the presence or absence of surrogate Macondo oil with and without Corexit. Marine Chemistry, 206, 84–92. doi:10.1016/j.marchem.2018.09.003

Shi, D., Bera, G., Knap, A. H., Quigg, A., Al Atwah, I., Gold-Bouchot, G., & Wade, T. L. (2020). A mesocosm experiment to determine half-lives of individual hydrocarbons in simulated oil spill scenarios with and without the dispersant, Corexit. Marine Pollution Bulletin, 151, 110804. doi:10.1016/j.marpolbul.2019.110804

Shiu, R.-F., Chiu, M.-H., Vazquez, C. I., Tsai, Y.-Y., Le, A., Kagiri, A., … Chin, W.-C. (2020). Protein to carbohydrate (P/C) ratio changes in microbial extracellular polymeric substances induced by oil and Corexit. Marine Chemistry, 223, 103789. doi:10.1016/j.marchem.2020.103789

Shiu, R.-F., Vazquez, C. I., Tsai, Y.-Y., Torres, G. V., Chen, C.-S., Santschi, P. H., … Chin, W.-C. (2020). Nano-plastics induce aquatic particulate organic matter (microgels) formation. Science of The Total Environment, 706, 135681. doi:10.1016/j.scitotenv.2019.135681

Sun, L., Chin, W.-C., Chiu, M.-H., Xu, C., Lin, P., Schwehr, K. A., … Santschi, P. H. (2019). Sunlight induced aggregation of dissolved organic matter: Role of proteins in linking organic carbon and nitrogen cycling in seawater. Science of The Total Environment, 654, 872–877. doi:10.1016/j.scitotenv.2018.11.140

Sun, L., Chiu, M.-H., Xu, C., Lin, P., Schwehr, K. A., Bacosa, H., … Santschi, P. H. (2018). The effects of sunlight on the composition of exopolymeric substances and subsequent aggregate formation during oil spills. Marine Chemistry. doi:10.1016/j.marchem.2018.04.006

Sun, L., Xu, C., Zhang, S., Lin, P., Schwehr, K. A., Quigg, A., … Santschi, P. H. (2017). Light-induced aggregation of microbial exopolymeric substances. Chemosphere. doi:10.1016/j.chemosphere.2017.04.099

Wade, T. L., Morales-McDevitt, M., Bera, G., Shi, D., Sweet, S., Wang, B., … Knap, A. H. (2017). A method for the production of large volumes of WAF and CEWAF for dosing mesocosms to understand marine oil snow formation. Heliyon, 3(10), e00419. doi:10.1016/j.heliyon.2017.e00419

Williams, A. K., Bacosa, H. P., & Quigg, A. (2017). The impact of dissolved inorganic nitrogen and phosphorous on responses of microbial plankton to the Texas City “Y” oil spill in Galveston Bay, Texas (USA). Marine Pollution Bulletin. doi:10.1016/j.marpolbul.2017.05.033

Wirth, M. A., Passow, U., Jeschek, J., Hand, I., & Schulz-Bull, D. E. (2018). Partitioning of oil compounds into marine oil snow: Insights into prevailing mechanisms and dispersant effects. Marine Chemistry, 206, 62–73. doi:10.1016/j.marchem.2018.09.007

Wozniak, A. S., Prem, P. M., Obeid, W., Waggoner, D. C., Quigg, A., Xu, C., … Hatcher, P. G. (2019). Rapid Degradation of Oil in Mesocosm Simulations of Marine Oil Snow Events. Environmental Science & Technology, 53(7), 3441–3450. doi:10.1021/acs.est.8b06532

Xu, C., Chin, W.-C., Lin, P., Chen, H., Chiu, M.-H., Waggoner, D. C., … Santschi, P. H. (2019). Comparison of microgels, extracellular polymeric substances (EPS) and transparent exopolymeric particles (TEP) determined in seawater with and without oil. Marine Chemistry, 215, 103667. doi:10.1016/j.marchem.2019.103667

Xu, C., Lin, P., Zhang, S., Sun, L., Xing, W., Schwehr, K. A., … Santschi, P. H. (2019). The interplay of extracellular polymeric substances and oil/Corexit to affect the petroleum incorporation into sinking marine oil snow in four mesocosms. Science of The Total Environment, 693, 133626. doi:10.1016/j.scitotenv.2019.133626

Xu, C., Zhang, S., Beaver, M., Lin, P., Sun, L., Doyle, S. M., … Santschi, P. H. (2018). The role of microbially-mediated exopolymeric substances (EPS) in regulating Macondo oil transport in a mesocosm experiment. Marine Chemistry, 206, 52–61. doi:10.1016/j.marchem.2018.09.005

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