Abstract:

Deep sea fishes were collected in the northern Gulf of Mexico during DEEPEND cruise DP05 from May 1 to 11, 2017. This dataset contains Genbank accession numbers of DNA sequences of the mitochondrial Cytochrome c oxidase I (COI) gene from fish species collected.

Suggested Citation:

Finnegan, K.A., Bernard, A.M., Weber, M., Eytan,R.I. and Shivji, M.S.. 2018. DNA sequences of mitochondrial Cytochrome c oxidase I (COI) genes from deep sea fishes collected during DEEPEND cruise DP05 from 2017-05-01 to 2017-05-11. Distributed by: GRIIDC, Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/n7-rmfn-4d68

Purpose:

To assess the genetic biodiversity of deep sea fishes.

Data Parameters and Units:

Spreadsheet Name: "R4.x257.228.0011_version1.xlsx" Description: DNA sequences of the mitochondrial Cytochrome c oxidase I (COI) gene from cruise-collected deep sea fishes. Column Headers of Spreadsheet: ID#: Genetic sample identification Number; Cruise: Sample collection cruise number; Collection Date: Date of sample collection; Order: Name of taxonomic order of sample; Family: Name of taxonomic family of sample; Genus Species: Name of taxonomic genus of sample; Genbank Accession #: National Center for Biotechnology Information (NCBI) record number or identifier for the sample’s DNA barcode sequence of the mitochondrial protein coding gene Cytochrome c oxidase subunit I; Source: Institution responsible for generating and verifying DNA barcode; Start Lat: Starting latitude of sample collection trawl; Start Lon: Starting longitude of sample collection trawl; End Lat: End latitude of sample collection trawl; End Lon: End longitude of sample collection trawl; Trawl #: Sample collection cruise trawl number; Sample ID: Original at sea sample collection identifier. Spreadsheet Name: "R4.x257.228.0011_version2_updated_04272020.xlsx" Description: DNA sequences of the mitochondrial Cytochrome c oxidase I (COI) gene from cruise-collected deep sea fishes - with updated taxonomic identifications. Column Headers of Spreadsheet: ID#: Genetic sample identification Number; Cruise: Sample collection cruise number; Collection Date: Date of sample collection; Order: Name of taxonomic order of sample; Family: Name of taxonomic family of sample; Genus Species: Name of taxonomic genus of sample; Genbank Accession #: National Center for Biotechnology Information (NCBI) record number or identifier for the sample’s DNA barcode sequence of the mitochondrial protein coding gene Cytochrome c oxidase subunit I; Source: Institution responsible for generating and verifying DNA barcode; Start Lat: Starting latitude of sample collection trawl; Start Lon: Starting longitude of sample collection trawl; End Lat: End latitude of sample collection trawl; End Lon: End longitude of sample collection trawl; Trawl #: Sample collection cruise trawl number; Sample ID: Original at sea sample collection identifier; Original Identification in GRIIDC: Original taxonomic identification of sample in GRIIDC - if not blank, sample taxonomic ID has been updated in GRIIDC and GenBank.

Methods:

DNA sequencing of the mitochondrial protein coding gene Cytochrome c oxidase subunit I.

Provenance and Historical References:

This dataset was initially published on 2018-10-26 and was revised again on 2020-04-27 to update some taxonomic identifications. The dataset now includes both the originally submitted (R4.x257.228.0011_version1) file as well as the revised version (R4.x257.228.0011_version2_updated_04272020).

Individual Files: