Abstract:

This data set includes the biological and environmental data for all of the species collected during the DP01 (May 2015) and DP02 cruises (August 2015). The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 1200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled to capture diel vertical migration information; one during daylight hours between 9am-2:30pm CDT, and the other at 9pm-2:30am CDT. A dipnet and a neuston net were also used to collect sargassum and other animals from the surface for genetic and stable isotope analyses. A table of the taxonomic hierarchy used in the nekton database will be included with references to those scientific names recently updated which are not yet reflected by the Integrated Taxonomic Information System (www.itis.gov). The MOCNESS sensor data and ship data collected during cruise DP01 are available in GRIIDC datasets R4.x257.226:0002 and R4.x257.226:0003 respectively and for cruise DP02 in GRIIDC datasets R4.x257.226:0006 and R4.x257.226:0011 respectively.

Suggested Citation:

April Cook and Tracey Sutton. 2017. Inventory of Gulf oceanic fauna data including species, weight, and measurements. Cruises DP01 May 1-8, 2015 and DP02 August 9-21, 2015 R/V on the Point Sur in the Northern Gulf of Mexico. Distributed by: GRIIDC, Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N70P0X3T

Publications:

Hendry, T. A., Freed, L. L., Fader, D., Fenolio, D., Sutton, T. T., & Lopez, J. V. (2018). Ongoing Transposon-Mediated Genome Reduction in the Luminous Bacterial Symbionts of Deep-Sea Ceratioid Anglerfishes. mBio, 9(3). doi:10.1128/mbio.01033-18

Kupchik, M. J., Benfield, M. C., & Sutton, T. T. (2018). The First In Situ Encounter of Gigantura chuni (Giganturidae: Giganturoidei: Aulopiformes: Cyclosquamata: Teleostei), with a Preliminary Investigation of Pair-Bonding. Copeia, 106(4), 641–645. doi:10.1643/ce-18-034

Timm, L. E., Bracken-Grissom, H. D., Sosnowski, A., Breitbart, M., Vecchione, M., & Judkins, H. (2020). Population genomics of three deep-sea cephalopod species reveals connectivity between the Gulf of Mexico and northwestern Atlantic Ocean. Deep Sea Research Part I: Oceanographic Research Papers, 103222. doi:10.1016/j.dsr.2020.103222

Judkins, H., Lindgren, A., Villanueva, R., Clark, K., & Vecchione, M. (2019). A description of three new bathyteuthid squid species from the North Atlantic and Gulf of Mexico. Bulletin of Marine Science. doi:10.5343/bms.2019.0051

Moore, J. A., Fenolio, D. B., Cook, A. B., & Sutton, T. T. (2020). Hiding in Plain Sight: Elopomorph Larvae Are Important Contributors to Fish Biodiversity in a Low-Latitude Oceanic Ecosystem. Frontiers in Marine Science, 7. doi:10.3389/fmars.2020.00169

Judkins, H., & Vecchione, M. (2020). Vertical Distribution Patterns of Cephalopods in the Northern Gulf of Mexico. Frontiers in Marine Science, 7. doi:10.3389/fmars.2020.00047

MAPSTONE, G., & YOUNGBLUTH, M. (2020). <p><strong>New observations on the rare physonect <em>Melophysa</em> <em>melo</em> (Siphonophora; Agalmatidae) from the northern Gulf of Mexico</strong></p>. Zootaxa, 4732(1), 117–137. doi:10.11646/zootaxa.4732.1.5

Baker, L. J., Freed, L. L., Easson, C. G., Lopez, J. V., Fenolio, D., Sutton, T. T., … Hendry, T. A. (2019). Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment. eLife, 8. doi:10.7554/elife.47606

Clark, K. A., Vecchione, M., Seibel, B. A., & Judkins, H. L. (2021). Species Abundance, Spatial and Vertical Distributions, and Eye-Size Trends of Large Heteropods (Pterotracheidae and Carinariidae) in the Northern Gulf of Mexico. American Malacological Bulletin, 38(2). doi:10.4003/006.038.0201

Bos, R. P., Sutton, T. T., & Frank, T. M. (2021). State of Satiation Partially Regulates the Dynamics of Vertical Migration. Frontiers in Marine Science, 8. doi:10.3389/fmars.2021.607228

Varela, C., & Bracken-Grissom, H. (2021). A Mysterious World Revealed: Larval-Adult Matching of Deep-Sea Shrimps from the Gulf of Mexico. Diversity, 13(10), 457. https://doi.org/10.3390/d13100457

Woodstock, M. S., Sutton, T. T., & Zhang, Y. (2022). A trait‐based carbon export model for mesopelagic fishes in the Gulf of Mexico with consideration of asynchronous vertical migration, flux boundaries, and feeding guilds. Limnology and Oceanography, 67(7), 1443–1455. Portico. https://doi.org/10.1002/lno.12093

Purpose:

Inventory of biological and environmental data for cruises DP01 and DP02 for use in DEEPEND publications.

Data Parameters and Units:

File: DP01_02 Trawl Data_101716.xlsx: EntryNum (Automatic number uniquely identifies each record); TrawlNo (Unique identifier for each trawl deployment); TrawlNo_NetNo (Unique identifier for use in queries); Cruise_Name (Name of the Vessel); Cruise_No (Cruise Number); Gear (Sample Method; MOC10 = 10 meter MOCNESS Net; TT = Tucker Trawl; NN = Neuston Net; BN = Bongo Net; DIP = Dipnet at the surface); StationID (NRDA Station ID); SolarCycle (Day/Night sampling time (D = day (exclusive of twilights) and N = night (exclusive of twilights))); NetNo (Net Number (Bongo: L-left, R-Right; Neuston: 1; 1m2 MOCNESS: 0-7)); SampleID (NRDA Unique Identifier for each Sample); SampleDate (Sample Date (DDMMMYY) when trawl was deployed); StartLat (Start Latitude in Dec degrees); StartLon (Start Longitude in Dec degrees); EndLat (End Latitude in Dec degrees); EndLon (End Longitude in Dec degrees); TowStartTime_CDT (Tow/Transect Start Time in local time (central daylight time)); TowEndTime_CDT (Tow/Transect End Time in local time (central daylight time)); ElapsedTime (Time elapsed between tow start and end times - Hours:Minutes (__ __:__ __)); MOC10FileName (MOC10 File Name (.PRO)); MinDepth (Minimum depth of net sampling m); MaxDepth (Maximum depth of net sampling m); DepthRange (Depth Range (min sampling depth – maximum sampling depth) m); DepthCode (1: 1500-1200m, 2:1200-1000m, 3:1000-600m, 4:600-200m, 5: 200-0m, 1a:1500-1000m, 1b:1300-1200m, 3a:1000-0m, 3b:800-600m, 3c:900-800m, 3d:1000-800m, 4a: 600-400m, 4b:400-200m, 4c:600-0m, 4d:500-0m, 5a:200-100m, 5b:100-0 m); DepthBin (Represents the depth bin used for analysis when binning samples; 1: 1500-1200m, 2:1200-1000m, 3:1000-600m, 4:600-200m, 5: 200-0m); MaxWaterDepth (Maximun Water Column Depth (m)); MaxDeployDepth (Maximum Depth of net during that Deployment); DepthUnits (Depth Units (m)); Volume (Volume Filtered by the net calculated by the MOCNESS software); VolUnits (Volume Filtered Units); Quant_or_Meat (Meat: Incorrect or missing flow data or the net ripped, Non-Standard: Net fished depth ranges other than strict depth bins 1-5, Quantitative: Net fished correct depth strata and has valid flow data, X: Net did not open, no sample collected); NetMeshSize (Net Mesh Size); NetMeshSizeUnits (Net Mesh Size Units (mm or um)); SampPres (Sample Preservation); Comments (Sample Notes); All5NetsQuant (True if nets 1-5 are all quantitative; this column is only used for analysis purposes); File: DP01_02 Nekton Database_101716.xlsx: EntryNumber (Automatic number to uniquely identify entries); SampleID (Unique Identifier for each Sample); TaxonomicRank (Taxon level in a taxonomic hierarchy); Lowest_Taxonomic_Identification (Taxonomic identification to the level of 100% confidence); Taxon_Comments (Comments related to the identification of the animal); Counts (Count of individuals in the taxonomic group in the sample); WetWeight_kg (Wet weight (kg) recorded at sea by motion-compensating scale with a 1.0 g resolution (blank values did not register a weight)); PostFormWeight (Weight (g) recorded after being preserved in 10% formalin); PostEthWeight (Weight (g) recorded after being preserved in 70% ethanol); PostIsoWeight (Weight (g) recorded after being preserved in 50% isopropyl); LifeHistory_Stage (Life stage of nekton if known (Larvae;Post-larvae;Transforming Juvenile;Juvenile;Adult)); Sex (Gender); Genetics_YN (Tissue sample or whole animal sampled for genetic barcoding and/or population genetics/connectivity studies); SIA_YN (Whole animal frozen -20 for Dr. David Wells/Travis Richards Stable Isotope studies (TAMUG)); PAH_YN (Whole animal or dissected animal frozen -20 for Dr. Isabel Romero for PAH studies (USF CMS)); CSIA_YN (Tissue sample or whole animal preserved in liquid nitrogen (TAMUG)); Hg_YN (Whole animal frozen -20 for Dr. Chad Hammerschmidt (chad.hammerschmidt@wright.edu) at Wright State University (WSU)); Photo_YN (Photographed by Dante Fenolio at sea); Disposition (Lab or container tracking the sample; Default value=“Bucket” which means it was placed into the sample jar collected in the field and resides at NSU; “DPXXXX” if placed into a separate jar; TAMUG/WSU/FRANK/USFSP/USF designates the lab to which the sample was sent)); Comments (Sample comments); LengthUnits (unit of measure for length); ST_Length_1 through ST_Length_25 (Length of organism; Squid - mantle length; fish - standard length on most fish, total length for eels; Shrimp - Carapace length); File: DP01 DP02 Taxon_List_101716.xlsx: LowestTaxonomicIDStandard (The lowest taxonomic identification made); TaxonomicRank (Taxon level in a taxonomic hierarchy); FunctionalGroup (Groupings according to similar acoustic signatures); Species; Genus; Tribe; Subfamily; Family; Superfamily; Subsection; Section; Infraorder; Suborder; Order; Superorder; Infraclass; Subclass; Class; Superclass; Subphylum; Phylum; Kingdom; Reference; Gelzoop File: Metadata_DEEPEND_DB_101716.docx: Metadata information for the files.

Individual Files: