Dataset Available

Single-locus barcodes and demultiplexed ddRADseq data for comparative population genomic analysis of the mesopelagic shrimp species Acanthephyra purpurea, Systellaspis debilis, and Robustosergia robusta

Authors: LE Timm, HD Bracken-Grissom
Published On: Jan 08 2020 17:30 UTC
DOI: https://doi.org/10.7266/n7-3p3y-g470
UDI: R4.x257.000:0007
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Project Information

Funded By:
Gulf of Mexico Research Initiative

Funding Cycle:
RFP-IV

Research Group:
Deep-Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND)

Point of Contact

Heather Bracken-Grissom
Florida International University / Marine Sciences Program
heather.brackengrissom@fiu.edu

Data Collection Period
2011-01-01
to
2016-08-18
Theme keywords

Midwater shrimp, Population genetics/genomics, ddRADseq, Acanthephyra purpurea, Robustosergia robusta, Systellaspis debilis

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Abstract:

This data set includes accession numbers of sequences associated with double digest Restriction-site Associated DNA sequencing (ddRAdseq) of three species of midwater shrimp (Acanthephyra purpurea, Robustosergia robusta, and Systellaspis debilis) collected from Bear Seamount in the northwestern Atlantic, the Gulf of Mexico, and the Florida Straits from 2011-01-01 to 2016-08-18. Date, longitude and latitude, and depth of sample collection are also included in the dataset.

Suggested Citation:

LE Timm, HD Bracken-Grissom. 2020. Single-locus barcodes and demultiplexed ddRADseq data for comparative population genomic analysis of the mesopelagic shrimp species Acanthephyra purpurea, Systellaspis debilis, and Robustosergia robusta. Distributed by: GRIIDC, Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/n7-3p3y-g470

Publications:

Timm, L. E., Isma, L. M., Johnston, M. W., & Bracken-Grissom, H. D. (2020). Comparative Population Genomics and Biophysical Modeling of Shrimp Migration in the Gulf of Mexico Reveals Current-Mediated Connectivity. Frontiers in Marine Science, 7. doi:10.3389/fmars.2020.00019

Purpose:

Data was generated to analyze population connectivity between the Gulf of Mexico and the Atlantic.

Data Parameters and Units:

Bioproject_accession, accession (run accession), study, accession (sample accession), sample_name, organism (Acanthephyra purpurea, Robustosergia robusta, Systellaspis debilis), isolate (Midwater shrimp), isolation_source (Oceanic midwater), collection_date (DD-Mon-YY), geo_loc_name (Atlantic Ocean: Bear Seamount; Atlantic Ocean: Gulf of Mexico; Atlantic Ocean: Florida Straits), tissue (Abdominal muscle), biomaterial_provider (Florida International Crustacean Collection: North Miami, FL, USA), collected_by (LE Timm), depth (m), , dev_stage (Adult), identified_by (T Frank; HD Bracken-Grissom), lat_lon (decimal degrees), station_id, genbank_targeted_locus (16S; COI), genbank_accession, sequencing_project, index, barcode, library_strategy (RAD-Seq), library_source (GENOMIC), library_selection (Reduced representation), library_layout (single), platform (ILLUMINA), instrument_model (NextSeq 500), design_description, filetype (fastq), filename.

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