Abstract:

This dataset includes 12S, 16S, and COI sequence data. Sequences were obtained from the eight recognized species of Farfantepenaeus: F. aztecus, F. brasiliensis, F. brevirostris, F. californiensis, F. duorarum, F. isabelae, F. notialis, and F. subtilis. Also included are several sequences from species of Litopenaeus, which serve as outgroup(s).

Suggested Citation:

Timm, L. E., Simon, S., Bracken-Grissom, H. D.. 2018. Mitochondrial DNA sequence alignments for phylogenetic analysis of the shrimp genus Farfantepenaeus. Distributed by: GRIIDC, Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/n7-9yq3-3177

Publications:

Timm, L., Browder, J. A., Simon, S., Jackson, T. L., Zink, I. C., & Bracken-Grissom, H. D. (2019). A tree money grows on: the first inclusive molecular phylogeny of the economically important pink shrimp (Decapoda : Farfantepenaeus) reveals cryptic diversity. Invertebrate Systematics. doi:10.1071/is18044

Purpose:

Dataset was generated to infer the species-level phylogenetic relationships within the genus Farfantepenaeus.

Data Parameters and Units:

GRIIDC_GenBankSubmissions_20170117.xlsx: 12S, 16S, and COI worksheets: HBG Number, Phylum, Class, Order, Family, Genus, Species, 12S Primer, 12S Reverse Primer, Country/Location, Collection Date (MM/DD/YYYY), Latitude (decimal degrees), Longitude (decimal degrees), GenBank Accession Numbers. Sequence data for 12S, 16S, and COI (cytochrome oxidase subunit I) genes located in text files.

Individual Files: